Checkout sizes of MySQL databases
If you are trying to find which databases are actually taking up how much space but only have one huge ibdata1 in your /var/lib/mysql and the directories inside your mysql data directory don't represent the actual database sizes?
Go for this
Run from mysql command prompt with root permission
SELECT table_schema AS "Database name", SUM(data_length + index_length) / 1024 / 1024 AS "Size (MB)" FROM information_schema.TABLES GROUP BY table_schema;
Result will be like this.
+--------------------+---------------+
| Database name      | Size (MB)     |
+--------------------+---------------+
| information_schema |    0.00781250 |
| db1               | 1753.67187500 |
| db1_live          | 3458.10937500 |
| db1_rpt_live      |   82.37500000 |
| mysql              |    0.61531639 |
+--------------------+---------------+
5 rows in set (29.33 sec)